PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G196500.1
Common NameB456_004G196500, LOC105792049
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 329aa    MW: 35675.1 Da    PI: 7.1873
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G196500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.9e-1293137347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+  ++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
  Gorai.004G196500.1  93 PWTEEEHRMFLLGLQKLGKGDWRGISRNYVISRTPTQVASHAQKY 137
                         8*****************************89************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.105.7E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.40286142IPR017930Myb domain
SuperFamilySSF466896.8E-1788143IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-1989141IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.2E-1190136IPR009057Homeodomain-like
SMARTSM007171.9E-1090140IPR001005SANT/Myb domain
CDDcd001676.77E-993138No hitNo description
PfamPF002492.6E-1093137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLSQYSGS NSGAHNGNGS  60
GSPGEGPDHT DGYASEDFVP GSSSSRERKK GVPWTEEEHR MFLLGLQKLG KGDWRGISRN  120
YVISRTPTQV ASHAQKYFIR QSNVSRRKRR SSLFDIVADE SSDTPMASQD LFSANHPHAE  180
TQSNDQLSIP PTLDEEDKSM DSNNSNDGET VPPKSESSQP CYPVVYPTYF PPFFPYSLPY  240
WMGYDTEPTK KDTHEVVKPT AVHSKSPINV DELVGMSKLS LGESIGDSGS SSLSLKLDGS  300
SRQSAFHANP ASSGNSNMDS SGNPIHAV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475875.10.0PREDICTED: myb-like protein J
TrEMBLA0A0D2PF070.0A0A0D2PF07_G
STRINGPOPTR_0001s15510.11e-177(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34262759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-107MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]